සැකිල්ල:Infobox biodatabase/ලේඛය
Appearance
මෙම සැකිල්ල ලුවා භාවිතා කරයි: |
Infobox used to describe a Biological database. For each database we want to know if the database is still in use, if a web service or a sql access is available, if it is specific to a given organism, etc...
Please, don't forget to add Category:Biological databases at the bottom of the article.
Fields
[සංස්කරණය]Content
[සංස්කරණය]- title: title e.g. FusariumDB
- description:short description e.g.: Cyber infrastructure for Fusarium
- scope: Could be one of : Nucleotide Sequence, RNA sequence, Protein sequence, Structure, Genomics (non-vertebrate), Metabolic and Signaling Pathways, Human and other Vertebrate Genomes, Human Genes and Diseases, Microarray Data and other Gene Expression, Proteomics Resources, Other Molecular Biology, Organelle, Plant, Immunological...
- organism: one or more organisms specific to this database
Contact
[සංස්කරණය]- center or centre: the research center. e.g. NCBI
- laboratory: the laboratory
- author: the author(s) of this database
- citation: the primary citation for an article describing the database (alternatively use
pmid=
for the PubMed ID, but don't use both) - pmid: PMID for an article describing the database (alternatively use
citation=
, but don't use both) - released: release date
Access
[සංස්කරණය]- standard: MIs, Data formats, Terminologies
- format: Data formats
- sql: if the database is available as a public SQL server (could be a URL pointing to the documentation )
- webservice: if there is a web service for this database (could be a URL pointing to a WSDL file.
- sparql: sparql endpoint(s) if any
- download: download area, FTP site...
Tools
[සංස්කරණය]- webapp: Web application(s)
- standalone: Standalone tool(s)
Misc.
[සංස්කරණය]- versioning: Versioning policy/ access to historical files
- license: license for the data.
- frequency: Data release frequency
- curation: Curation policy
- version: release version
- bookmark: Can you bookmark the entity in this database (http GET method)
Model
[සංස්කරණය]{{Infobox biodatabase |title = |logo = |description = |scope = |organism = |center = |laboratory = |author = |citation = |released = |standard = |format = |url = |download = |webservice = |sql = |sparql = |webapp = |standalone = |license = |versioning = |frequency = |curation = |bookmark = |version = }}
Example
[සංස්කරණය]Content | |
---|---|
Description | GenBank, the NIH genetic sequence database |
Data types captured | Nucleotide Sequence, Protein sequence |
Organisms | all |
Contact | |
Research center | NCBI |
Primary citation | PMID 21071399 |
Access | |
Data format | XML ASN.1 Genbank format |
Website | NCBI |
Download URL | ncbi ftp |
Web service URL | eutils soap |
Tools | |
Web | BLAST |
Standalone | BLAST |
Miscellaneous | |
License | Public domain-US Government |
Bookmarkable entities | yes |
{{Infobox biodatabase
| title = [[GenBank]]
| author =
| center = [[National Center for Biotechnology Information|NCBI]]
| organism = all
| description = GenBank, the NIH genetic sequence database
| scope = Nucleotide Sequence, Protein sequence
| url = [https://www.ncbi.nlm.nih.gov/ NCBI]
| download = [ftp://ftp.ncbi.nih.gov/ ncbi ftp]
| webservice = [http://eutils.ncbi.nlm.nih.gov/ eutils]<br/>
[http://eutils.ncbi.nlm.nih.gov/soap/v2.0/eutils.wsdl soap]
| license = Public domain-US Government
| pmid = 21071399
| logo = [[File:US-NLM-NCBI-Logo.svg|60px]]
| standalone=[[BLAST]]
| webapp=[[BLAST]]
| format= [[XML]]<br/>[[ASN.1]]<br/>Genbank format
| bookmark=yes
}}
Quick generation with XSLT
[සංස්කරණය]The following XSLT stylesheet https://gist.github.com/768553 can be used to generate a stub from a Pubmed article.
$ xsltproc --novalid \
> pubmed4biodb.xsl \
> "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=19846593&retmode=xml"
{{infobox_biodatabase
|title = REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.
|logo =[[File:Database.png]]
|description = REBASE--a database for DNA restriction and modification: enzymes, genes and genomes.
|scope =
|organism =
|center =
|laboratory = New England Biolabs, Inc, 240 County Road, Ipswich, MA 01938, USA.
|author = Richard J Roberts
|pmid = 19846593
(...)
Tracking categories
[සංස්කරණය]- ප්රවර්ගය:Pages using infobox biodatabase with a malformed pmid (0)
- ප්රවර්ගය:Pages using infobox biodatabase with unknown parameters (0)
See also
[සංස්කරණය]